Viral pneumonia (unknown virus, not influenza)

DOID EFO MESH SNOMED PheWeb

VIRALPNEUMONAS

viral pneumonia: Inflammation of the lung parenchyma that is caused by a viral infection.

Endpoint definition

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FinnGen phenotype data

392423 individuals

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Apply sex-specific rule None

392423

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Check conditions None

392423

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Check pre-conditions, main-only, mode, registry filters

Hospital Discharge: ICD-10 J12.8, J12.9

Hospital discharge: ICD-9 480

Hospital discharge: ICD-8 480

Hospital discharge: excluded ICD-9 480[0-2]

Cause of death: ICD-10 J12.8, J12.9

Cause of death: ICD-9 480

Cause of death: ICD-8 480

Cause of death: excluded ICD-9 480[0-2]

2 out of 7 registries used, show all original rules.

1561

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Check minimum number of events None

1561

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Include endpoints None

1561

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Remove individuals based on genotype QC

1462

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VIRALPNEUMONAS

Control definitions

Control exclude ASTHMA_PNEUMONIA

Extra metadata

First used in FinnGen datafreeze DF2

NAME	VIRALPNEUMONAS
CONTROL_EXCLUDE	ASTHMA_PNEUMONIA
CONTROL_PRECONDITIONS
CONTROL_CONDITIONS
SEX
INCLUDE
PRE_CONDITIONS
CONDITIONS
OUTPAT_ICD
OUTPAT_OPER
HD_MAINONLY
HD_ICD_10_ATC
HD_ICD_10	J128\|J129
HD_ICD_9	480
HD_ICD_8	480
HD_ICD_10_EXCL
HD_ICD_9_EXCL	480[0-2]
HD_ICD_8_EXCL
COD_MAINONLY
COD_ICD_10	J128\|J129
COD_ICD_9	480
COD_ICD_8	480
COD_ICD_10_EXCL
COD_ICD_9_EXCL	480[0-2]
COD_ICD_8_EXCL
OPER_NOM
OPER_HL
OPER_HP1
OPER_HP2
KELA_REIMB
KELA_REIMB_ICD
KELA_ATC_NEEDOTHER
KELA_ATC
KELA_VNRO_NEEDOTHER
KELA_VNRO
CANC_TOPO
CANC_TOPO_EXCL
CANC_MORPH
CANC_MORPH_EXCL
CANC_BEHAV

Show upset plot detailing case counts by codes

Or the full data table

Similar endpoints

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List of similar endpoints to Viral pneumonia (unknown virus, not influenza) based on the number of shared cases.

Broader endpoints:

Narrower endpoints:

None

Show all endpoint correlations

Summary Statistics

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Key figures

	All	Female	Male
Number of individuals	1462	691	771
Unadjusted prevalence (%)	0.39	0.33	0.46
Mean age at first event (years)	39.25	37.00	41.27

Mortality

Follow-up	Absolute risk	HR [95% CI]	p	N
1998–2019	0.06	3.96 [2.22, 7.06]	3.0e-6	146
15 years	0.01	1.68 [1.04, 2.72]	3.4e-2	43
5 years	0.00	3.51 [2.28, 5.42]	1.4e-8	37
1 year	-	-	-	-

Age distribution of first events

Year distribution of first events

Cumulative Incidence

Correlations

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Index endpoint: VIRALPNEUMONAS – Viral pneumonia (unknown virus, not influenza)
GWS hits:

Survival analyses between endpoints

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Plot

before Viral pneumonia (unknown virus, not influenza)
after Viral pneumonia (unknown virus, not influenza)

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Table

Loading survival analyses table

Drugs most likely to be purchased after Viral pneumonia (unknown virus, not influenza)

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Endpoint not on priority list, no data to show.