Abscess of lung

DOID EFO MESH SNOMED PheWeb

J10_ABSCLUNGPNEUMO

Lung Abscess: Solitary or multiple collections of PUS within the lung parenchyma as a result of infection by bacteria, protozoa, or other agents.

Endpoint definition

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FinnGen phenotype data

392423 individuals

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Apply sex-specific rule None

392423

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Check conditions None

392423

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Check pre-conditions, main-only, mode, registry filters

Hospital Discharge: ICD-10 J85.1, J85.2

Hospital discharge: ICD-9 5130

Hospital discharge: ICD-8 51399

Cause of death: ICD-10 J85.1, J85.2

Cause of death: ICD-9 5130

Cause of death: ICD-8 51399

2 out of 7 registries used, show all original rules.

409

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Check minimum number of events None

409

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Include endpoints None

409

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Remove individuals based on genotype QC

390

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J10_ABSCLUNGPNEUMO

Control definitions

Control exclude J10_NECROTIC

Extra metadata

Level in the ICD hierarchy 3

First used in FinnGen datafreeze DF2

NAME	J10_ABSCLUNGPNEUMO
CONTROL_EXCLUDE	J10_NECROTIC
CONTROL_PRECONDITIONS
CONTROL_CONDITIONS
SEX
INCLUDE
PRE_CONDITIONS
CONDITIONS
OUTPAT_ICD
OUTPAT_OPER
HD_MAINONLY
HD_ICD_10_ATC
HD_ICD_10	J85[1-2]
HD_ICD_9	5130
HD_ICD_8	51399
HD_ICD_10_EXCL
HD_ICD_9_EXCL
HD_ICD_8_EXCL
COD_MAINONLY
COD_ICD_10	J85[1-2]
COD_ICD_9	5130
COD_ICD_8	51399
COD_ICD_10_EXCL
COD_ICD_9_EXCL
COD_ICD_8_EXCL
OPER_NOM
OPER_HL
OPER_HP1
OPER_HP2
KELA_REIMB
KELA_REIMB_ICD
KELA_ATC_NEEDOTHER
KELA_ATC
KELA_VNRO_NEEDOTHER
KELA_VNRO
CANC_TOPO
CANC_TOPO_EXCL
CANC_MORPH
CANC_MORPH_EXCL
CANC_BEHAV

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Or the full data table

Similar endpoints

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List of similar endpoints to Abscess of lung based on the number of shared cases.

Broader endpoints:

Narrower endpoints:

None

Show all endpoint correlations

Summary Statistics

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Key figures

	All	Female	Male
Number of individuals	390	105	285
Unadjusted prevalence (%)	0.10	0.05	0.17
Mean age at first event (years)	57.96	52.32	60.04

Mortality

Follow-up	Absolute risk	HR [95% CI]	p	N
1998–2019	-	-	-	-
15 years	-	-	-	-
5 years	-	-	-	-
1 year	-	-	-	-

Age distribution of first events

Year distribution of first events

Cumulative Incidence

Correlations

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Index endpoint: J10_ABSCLUNGPNEUMO – Abscess of lung
GWS hits:

Survival analyses between endpoints

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Plot

before Abscess of lung
after Abscess of lung

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Table

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Drugs most likely to be purchased after Abscess of lung

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Endpoint not on priority list, no data to show.