Cholera

AB1_CHOLERA

No definition available.

Endpoint definition

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FinnGen phenotype data

392423 individuals

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Apply sex-specific rule None

392423

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Check conditions None

392423

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Check pre-conditions, main-only, mode, registry filters

Hospital Discharge: ICD-10 A00

Hospital discharge: ICD-9 00[1]

Hospital discharge: ICD-8 00[0]

Cause of death: ICD-10 A00

Cause of death: ICD-9 00[1]

Cause of death: ICD-8 00[0]

2 out of 7 registries used, show all original rules.

1315

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Check minimum number of events None

1315

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Include endpoints None

1315

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Remove individuals based on genotype QC

1290

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AB1_CHOLERA

Control definitions

Control exclude AB1_INTESTINAL_INFECTIONS

Extra metadata

Level in the ICD hierarchy 3

First used in FinnGen datafreeze DF5

NAME	AB1_CHOLERA
CONTROL_EXCLUDE	AB1_INTESTINAL_INFECTIONS
CONTROL_PRECONDITIONS
CONTROL_CONDITIONS
SEX
INCLUDE
PRE_CONDITIONS
CONDITIONS
OUTPAT_ICD
OUTPAT_OPER
HD_MAINONLY
HD_ICD_10_ATC
HD_ICD_10	A00
HD_ICD_9	00[1]
HD_ICD_8	00[0]
HD_ICD_10_EXCL
HD_ICD_9_EXCL
HD_ICD_8_EXCL
COD_MAINONLY
COD_ICD_10	A00
COD_ICD_9	00[1]
COD_ICD_8	00[0]
COD_ICD_10_EXCL
COD_ICD_9_EXCL
COD_ICD_8_EXCL
OPER_NOM
OPER_HL
OPER_HP1
OPER_HP2
KELA_REIMB
KELA_REIMB_ICD
KELA_ATC_NEEDOTHER
KELA_ATC
KELA_VNRO_NEEDOTHER
KELA_VNRO
CANC_TOPO
CANC_TOPO_EXCL
CANC_MORPH
CANC_MORPH_EXCL
CANC_BEHAV

Show upset plot detailing case counts by codes

Or the full data table

Similar endpoints

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List of similar endpoints to Cholera based on the number of shared cases.

Broader endpoints:

Narrower endpoints:

None

Show all endpoint correlations

Summary Statistics

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Key figures

	All	Female	Male
Number of individuals	1290	1033	257
Unadjusted prevalence (%)	0.34	0.49	0.15
Mean age at first event (years)	33.34	31.42	41.07

Mortality

Follow-up	Absolute risk	HR [95% CI]	p	N
1998–2019	0.02	1.54 [1.12, 2.12]	8.2e-3	150
15 years	0.01	1.02 [0.75, 1.39]	8.9e-1	59
5 years	-	-	-	-
1 year	-	-	-	-

Age distribution of first events

Year distribution of first events

Cumulative Incidence

Correlations

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Index endpoint: AB1_CHOLERA – Cholera
GWS hits:

Survival analyses between endpoints

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Plot

before Cholera
after Cholera

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Table

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Drugs most likely to be purchased after Cholera

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Endpoint not on priority list, no data to show.