Other congenital malformations of the digestive system

DOID MESH PheWeb

Q17_OTHER_CONGEN_MALFO_DIGES_SYSTEM1

No definition available.

Endpoint definition

↥

FinnGen phenotype data

392423 individuals

diagram downward connector

Apply sex-specific rule None

392423

diagram downward connector

Check conditions None

392423

diagram downward connector

Check pre-conditions, main-only, mode, registry filters

Hospital Discharge: ICD-10 Q38-Q45

Cause of death: ICD-10 Q38-Q45

2 out of 7 registries used, show all original rules.

1172

diagram downward connector

Check minimum number of events None

1172

diagram downward connector

diagram downward connector

Include endpoints

Q17_OTHER_CONGEN_MALFO_TONGUE_MOUTH_PHARYNX

Q17_CONGEN_MALFO_OESOPHAGUS

Q17_OTHER_CONGEN_MALFO_UPPER_ALIME_TRACT

Q17_CONGEN_ABSENCE_ATRES_STENO_SMALL_INTESTINE

Q17_CONGEN_ABSENCE_ATRES_STENO_LARGE_INTESTINE

Q17_OTHER_CONGEN_MALFO_INTESTINE

Q17_CONGEN_MALFO_GALLB_BILE_DUCTS_LIVER

Q17_OTHER_CONGEN_MALFO_DIGES_SYSTEM2

1172

diagram downward connector

diagram downward connector

Remove individuals based on genotype QC

1125

diagram downward connector

Q17_OTHER_CONGEN_MALFO_DIGES_SYSTEM1

Control definitions

Controls for this endpoint are individuals that are not cases.

Extra metadata

Level in the ICD hierarchy 2

First used in FinnGen datafreeze DF4

Parent code in ICD-10 Q

Name in latin Aliae malformationes congenitae systematis digestorii

NAME	Q17_OTHER_CONGEN_MALFO_DIGES_SYSTEM1
CONTROL_EXCLUDE
CONTROL_PRECONDITIONS
CONTROL_CONDITIONS
SEX
INCLUDE	Q17_OTHER_CONGEN_MALFO_TONGUE_MOUTH_PHARYNX\|Q17_CONGEN_MALFO_OESOPHAGUS\|Q17_OTHER_CONGEN_MALFO_UPPER_ALIME_TRACT\|Q17_CONGEN_ABSENCE_ATRES_STENO_SMALL_INTESTINE\|Q17_CONGEN_ABSENCE_ATRES_STENO_LARGE_INTESTINE\|Q17_OTHER_CONGEN_MALFO_INTESTINE\|Q17_CONGEN_MALFO_GALLB_BILE_DUCTS_LIVER\|Q17_OTHER_CONGEN_MALFO_DIGES_SYSTEM2
PRE_CONDITIONS
CONDITIONS
OUTPAT_ICD
OUTPAT_OPER
HD_MAINONLY
HD_ICD_10_ATC
HD_ICD_10	Q3[8-9]\|Q4[0-5]
HD_ICD_9
HD_ICD_8
HD_ICD_10_EXCL
HD_ICD_9_EXCL
HD_ICD_8_EXCL
COD_MAINONLY
COD_ICD_10	Q3[8-9]\|Q4[0-5]
COD_ICD_9
COD_ICD_8
COD_ICD_10_EXCL
COD_ICD_9_EXCL
COD_ICD_8_EXCL
OPER_NOM
OPER_HL
OPER_HP1
OPER_HP2
KELA_REIMB
KELA_REIMB_ICD
KELA_ATC_NEEDOTHER
KELA_ATC
KELA_VNRO_NEEDOTHER
KELA_VNRO
CANC_TOPO
CANC_TOPO_EXCL
CANC_MORPH
CANC_MORPH_EXCL
CANC_BEHAV

Show upset plot detailing case counts by codes

Or the full data table

Similar endpoints

↥

List of similar endpoints to Other congenital malformations of the digestive system based on the number of shared cases.

Broader endpoints:

Narrower endpoints:

Show all endpoint correlations

Summary Statistics

↥

Key figures

	All	Female	Male
Number of individuals	1125	614	511
Unadjusted prevalence (%)	0.30	0.29	0.31
Mean age at first event (years)	36.40	35.72	37.21

Mortality

Follow-up	Absolute risk	HR [95% CI]	p	N
1998–2019	0.03	2.32 [1.21, 4.43]	1.1e-2	83
15 years	0.01	1.26 [0.63, 2.51]	5.2e-1	33
5 years	0.00	2.28 [0.93, 5.58]	7.1e-2	26
1 year	0.00	5.58 [2.20, 14.15]	3.0e-4	13

Age distribution of first events

Year distribution of first events

Cumulative Incidence

Correlations

↥

Index endpoint: Q17_OTHER_CONGEN_MALFO_DIGES_SYSTEM1 – Other congenital malformations of the digestive system
GWS hits: 5

Survival analyses between endpoints

↥

Plot

before Other congenital malformations of the digestive system
after Other congenital malformations of the digestive system

Loading survival analyses plot

Table

Loading survival analyses table

Drugs most likely to be purchased after Other congenital malformations of the digestive system

↥

Endpoint not on priority list, no data to show.