Carcinoma in situ of oral cavity and pharynx (controls excluding all cancers)

PheWeb

CD2_INSITU_OROPHARYNX_EXALLC

No definition available.

Endpoint definition

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FinnGen phenotype data

individuals

Apply sex-specific rule None

Check conditions

not C3_OROPHARYNX

Check pre-conditions, main-only, mode, registry filters

Hospital Discharge: ICD-10 D00.01&, D00.02&, D00.03&, D00.04&, D00.05&, D00.06&, D00.07&

Cause of death: ICD-10 D00.01&, D00.02&, D00.03&, D00.04&, D00.05&, D00.06&, D00.07&

Cancer registry: Topography ICD-O-3 C09|C10

Cancer registry: Morphology ICD-O-3 ANY

Cancer registry: Behaviour codes 2

3 out of 7 registries used, show all original rules.

Check minimum number of events None

Include endpoints None

Remove individuals based on genotype QC

CD2_INSITU_OROPHARYNX_EXALLC

Control definitions

Control exclude C3_CANCER, C3_CANCER_WIDE

Extra metadata

Level in the ICD hierarchy 3

First used in FinnGen datafreeze DF9

Parent code in ICD-10 D00

NAME	CD2_INSITU_OROPHARYNX_EXALLC
CONTROL_EXCLUDE	C3_CANCER\|C3_CANCER_WIDE
CONTROL_PRECONDITIONS
CONTROL_CONDITIONS
SEX
INCLUDE
PRE_CONDITIONS
CONDITIONS	!C3_OROPHARYNX
OUTPAT_ICD
OUTPAT_OPER
HD_MAINONLY
HD_ICD_10_ATC
HD_ICD_10	D000[1-7]
HD_ICD_9	$!$	The FinnGen clinical team has checked and no code can be used for this rule.
HD_ICD_8	$!$	The FinnGen clinical team has checked and no code can be used for this rule.
HD_ICD_10_EXCL
HD_ICD_9_EXCL
HD_ICD_8_EXCL
COD_MAINONLY
COD_ICD_10	D000[1-7]
COD_ICD_9	$!$	The FinnGen clinical team has checked and no code can be used for this rule.
COD_ICD_8	$!$	The FinnGen clinical team has checked and no code can be used for this rule.
COD_ICD_10_EXCL
COD_ICD_9_EXCL
COD_ICD_8_EXCL
OPER_NOM
OPER_HL
OPER_HP1
OPER_HP2
KELA_REIMB
KELA_REIMB_ICD
KELA_ATC_NEEDOTHER
KELA_ATC
KELA_VNRO_NEEDOTHER
KELA_VNRO
CANC_TOPO	C09\|C10
CANC_TOPO_EXCL
CANC_MORPH	ANY
CANC_MORPH_EXCL
CANC_BEHAV	2

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Or the full data table

Similar endpoints

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List of similar endpoints to Carcinoma in situ of oral cavity and pharynx (controls excluding all cancers) based on the number of shared cases.

Broader endpoints:

Narrower endpoints:

Carcinoma in situ of oral cavity and pharynx

Show all endpoint correlations

Summary Statistics

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Key figures

	All	Female	Male
Number of individuals	36	15	21
Unadjusted prevalence (%)	0.01	0.01	0.01
Mean age at first event (years)	63.24	66.56	60.86

Mortality

Follow-up	Absolute risk	HR [95% CI]	p	N
1998–2019	-	-	-	-
15 years	-	-	-	-
5 years	-	-	-	-
1 year	-	-	-	-

Age distribution of first events

Year distribution of first events

Cumulative Incidence

Correlations

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Index endpoint: CD2_INSITU_OROPHARYNX_EXALLC – Carcinoma in situ of oral cavity and pharynx (controls excluding all cancers)
GWS hits:

Survival analyses between endpoints

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Plot

before Carcinoma in situ of oral cavity and pharynx (controls excluding all cancers)
after Carcinoma in situ of oral cavity and pharynx (controls excluding all cancers)

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Table

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Drugs most likely to be purchased after Carcinoma in situ of oral cavity and pharynx (controls excluding all cancers)

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Endpoint not on priority list, no data to show.

≡ Risteys

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